Systems level modelling of metabolism in fungal endophytes - implications for the symbiosis with ryegrass
DOI:
https://doi.org/10.33584/rps.13.2006.3049Abstract
We used constraint based stoichiometric modelling of metabolic fluxes in EpichloÑ' festucae (FL1), a targeted gene replacement of a non-ribosomal peptide synthetase (termed sidF) from E. festucae, and the symbiotic association of these endophytic fungi and their host Lolium perenne. SidF encodes an excreted ironchelating siderophore and the sidF knockouts (KO) are impaired in their ability to take up iron. After constructing the metabolic network at a genome scale, we applied constraints on enzymatic reactions that require iron as co-factor to study the variations in metabolic network capabilities of the siderophore mutant versus wildtype, in culture and in planta. We compared fluxes calculated for the production of amino acids with observed concentrations of these amino acids in planta. We report a counter-intuitive result from considering metabolism on a systems level in our models. Keywords: stoichiometric metabolic network modelling, flux balance analysis, symbiosis, Neotyphodium lolii, Lolium perenne, EpichloÑ' festucae.
Downloads
Published
How to Cite
Issue
Section
License
Copyright
This work is licensed under a Creative Commons Attribution-Non Commercial-NoDerivatives 4.0 International License. Rights granted to the New Zealand Grassland Association through this agreement are non-exclusive. You are free to publish the work(s) elsewhere and no ownership is assumed by the NZGA when storing or curating an electronic version of the work(s). The author(s) will receive no monetary return from the Association for the use of material contained in the manuscript. If I am one of several co-authors, I hereby confirm that I am authorized by my co-authors to grant this Licence as their agent on their behalf. For the avoidance of doubt, this includes the rights to supply the article in electronic and online forms and systems.
